WebNov 14, 2024 · The algorithm used to identify hydrogen bonded residue pairs is exactly the same as the original DSSP algorithm, but is extended to output the hydrogen-bond-pair-matrix as continuous values in the range [0,1]. With the continuous variable extension above, the hydrogen-bond-pair-matrix is differentiable with torch.Tensor as input. WebDSSP SDK for PHP. Contribute to e-Contract/dssp-php development by creating an account on GitHub.
GitHub - ritae9/DSSP_IMPL: Secondary structures assignment using DSSP …
WebDSSP is a database of secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB). DSSP is also the name of the program that calculates DSSP entries from PDB entries. The above means there are actually two ways of looking at DSSP. First of all there are the precalculated DSSP files for each PDB entry. WebNov 10, 2024 · If you prefer the old DSSP format, you run: mkdssp 6tiz.pdb --output-format dssp. which will write the output to the terminal, alternatively you can do: mkdssp 6tiz.pdb 6tiz.dssp. And that will produce a file called 6tiz.dssp containing the … net filter in wireshark
Installation issues with libcifpp for dssp #38 - github.com
WebDigital Signature Service Protocol. This project provides the specifications and Java reference implementation for the Digital Signature Service Protocol. The Digital Signature Service Protocol is implemented by the e-Contract.be Digital Signature Service. More information about this service is available at: e-contract.be. WebMar 9, 2024 · GitHub is where people build software. More than 100 million people use GitHub to discover, fork, and contribute to over 330 million projects. ... Python program which is able to analyse dssp files in order to estimate the interacting area and interacting residues between monomers of a complex protein . WebBuild the docker image using the command docker build -t dssp . and run the image in a container, with a local source copy and data files mounted, with the command docker run -v /home/jon/projects/dssp:/app -v /mnt/extra:/srv/data -it dssp. Download and installation instructions. Pre-compiled old versions of DSSP are available from the old ... it\u0027s raining tacos one hour song